Conference Blogging
dgmacarthur | May 13, 2010I've been quiet for the last two weeks, largely due to some feverish last-minute analysis in the lead-up to this year's Biology of Genomes meeting at Cold Spring Harbor Laboratory, where I spoke in (and co-chaired) the Genetics of Complex Traits session.
Long-term readers may recall that I sparked off a minor controversy at last year's meeting by writing several blog posts summarising presented work. While I deliberately steered clear of discussing unpublished or contentious work, basically focusing on the "big picture" messages emerging from the sessions rather than the technical details, I…
dgmacarthur | February 28, 2010The main theme of this year's Advances in Genome Biology and Technology meeting should come as no surprise to regular readers: sequencing. Generating as many bases of DNA sequence as quickly, cheaply and accurately as possible is the goal of the moment, and the number of companies jostling to achieve that goal is growing rapidly.
The meeting saw impressive performances from established players in the field, especially Illumina: their new HiSeq 2000 instrument seems to have dug in as the platform of choice for generating vast amounts of high-quality short-read data. Life Technologies seem to…
dgmacarthur | February 26, 2010Stephen Turner from Pacific Biosciences gave a dramatic presentation this afternoon launching PacBio's new third-generation sequencing instrument. The room was packed for the seminar, with a palpable buzz, and Turner's presentation was preceded by a theatrical introduction from PacBio CEO Hugh Martin.
The crescendo of Turner's presentation was the unveiling of a video showing the new (and enormous) PacBio instrument, which has been tucked away in a room here at AGBT and revealed to a trickle of VIPs (including Bio-IT World's Kevin Davies) - if that's the kind of thing you're into, PacBio…
dgmacarthur | February 26, 2010I've been remiss in blogging from the Advances in Genome Biology and Technology meeting here in Marco Island, Florida, primarily due to some panic-stricken last-minute changes to the slides for my own presentation last night.
Fortunately the conference has been extremely well-covered by others: Sanger colleague Luke Jostins has blog posts up summarising day 1 and day 2 of the meeting; Dan Koboldt from MassGenomics has his first impressions and a review of the cancer genomics session; and Anthony Fejes is continuing the tradition of publishing extensive notes on every talk he attends.
There…
dgmacarthur | February 22, 2010I'll be at the Advances in Genome Biology and Technology meeting in Marco Island, Florida for the next week, soaking up sun and genomics, keeping my eye out for the anticipated major announcements from sequencing companies and researchers, and quietly panicking about my presentation on Thursday. You'll hear more about the meeting from me and the other bloggers there - Luke Jostins, David Dooling, Dan Koboldt and Anthony Fejes - over the next week.
It's amazing to think that it was at the same meeting in 2009 - just one year ago - that Complete Genomics emerged dramatically from stealth mode…
dgmacarthur | October 14, 2009I'll be away for the American Society of Human Genetics meeting in Hawaii for most of the next couple of weeks - I'll be covering the conference primarily via Twitter, and you can follow all of the tweets from the conference using the #ASHG2009 hashtag.
Genetics bloggers/tweeters should also pencil in the "tweetup" on Thursday 22nd from 4:30 to 5:15 in the ASHG Press Office (Room 318 in the Convention Center), organised by Chris Gunter; anyone interested should RSVP via email. This should be a good chance to put faces to many of the names in your Twitter and RSS feeds.
There's a lot of…
dgmacarthur | July 6, 2009A while back I pondered the possibility of creating icons for conference presenters to add to their first slide to alert bloggers/tweeters in the audience about whether the presented data was "blog-safe". This was provoked by a recent episode illustrating general confusion among bloggers (in this case, me) and scientists about the use of social media at conferences.
Fellow Australian-turned-UK-resident-scientist Cameron Neylon has now put together a handy set of slides for presenters to label both "blog-safe" and "no-blogging" presentations. The slides have a ccZero license and so are freely…
dgmacarthur | June 24, 2009Geoff Brumfiel has done a great job in this article for Nature News on the promise and perils of conference blogging. On the promise side there is discussion of the wildly successful FriendFeed coverage of last year's ISMB meeting, which ended up being aggregated into a journal article; in the perilous direction, I get a mention for my mildly disastrous foray into conference blogging at the recent Cold Spring Harbor Biology of Genomes meeting.
Brumfiel does a good job of conveying the currently chaotic state of conference policies towards the use of social media by participants:…
dgmacarthur | June 19, 2009Added in edit: the original version of this post implied that the Nature editorial was recent, when it was in fact published in February this year; I was sent a link to it today and assumed it was new. I've edited the post to reflect this.
One of the major reasons for concern from presenters and conference organisers about the notion of conference bloggers is that having unpublished work discussed online may violate the embargo policies of journals and damage their chances of publication.
We do have clarification of this issue from one major journal. Nature has an editorial posted back in…
dgmacarthur | June 18, 2009Readers who haven't seen it already may be interested in the post and subsequent discussion on conference blogging taking place on Dr Isis' blog.
I feel that Dr Isis' post misrepresents my position in several ways (see this clarifying comment from me), but she does provide an interesting argument against the notion that "open tweeting" should be the default position unless the presenter explicitly states otherwise.
The discussion has given me an opportunity to clarify my thoughts on a few issues. Below the fold I've pasted some snippets from my comments on Dr Isis' post summing up some…
dgmacarthur | June 17, 2009The rather contentious result of my live-blogging of the Biology of Genomes meeting last month made it very clear to me that the scientific community needs to do a better job of communicating in advance whether a presentation is off-limits to audience live-bloggers. I've since been involved in a number of discussions about this issue both on- and off-line.
Cold Spring Harbor Laboratory (the host of the Biology of Genomes meeting) has clarified its own position, stating that potential live-bloggers (or tweeters) need to explicitly seek permission from speakers before writing about their…
dgmacarthur | June 4, 2009There has been some very interesting online discussion in a number of venues today about the topic of social media and scientific conferences. For those who missed my post yesterday, the discussion was sparked by an article in ScienceInsider reporting that Cold Spring Harbor Laboratory had produced a new policy on the use of social media at its conferences, which essentially states that attendees should ask permission from presenters before discussing their work online (it's worth noting that this policy is one that CSHL has long applied to affiliated reporters). The policy release was…
dgmacarthur | June 3, 2009I've just been pointed to a post on ScienceInsider that mentions my recent coverage (also on Twitter) of the Cold Spring Harbor Biology of Genomes meeting, and the resulting request for clarification from some professional science reporters:
In addition to reporting on genetic variation in a gene that is
active in fast muscle fibers at The Biology of Genomes meeting,
MacArthur wrote several on the spot blog posts covering advances discussed by the participants. Francis Collins also mentioned results on his new Web site.
A specialized Web-based news service, Genomeweb,
complained. To attend…
jlynch | March 29, 2009
SkeptiCamp Phoenix 2009 went off wonderfully yesterday. Big thanks to Jim Lippard for doing such a wonderful organizational job.
The picture above is me beginning my 20 minute gallop through the issue of academic freedom and the intelligent design movement. Shorter - and undoubtedly more coherent - version is:
Evolution is not an unchallengeable orthodoxy within science and major areas (of evolution as fact, the pathway of evolution, and its mechanisms) have been challenged in the past by researchers working within the field. These researchers used the institutions of science (peer reviewed…
jlynch | March 28, 2009SkeptiCamp Phoenix beings in a few minutes. Jim Lippard has all the details and Magic Tony, one of the presenters, will be live-blogging the event, and there may also be twittering at #skepticamp. I'll be adding bits and pieces as the spirit moves me.
jlynch | March 22, 2009I spent last Thursday and Friday at the Unchallengeable Orthodoxies conference hosted by the ASU Sandra Day O'Connor Law School in conjunction with the University of Cambridge. Lots of interesting discussion on academic freedom, scientific practice and suchlike. I presented a 20 minute case study on why I felt that evolution was not an unchallengeable orthodoxy and why creationist claims about being stifled or expelled do not hold up when examined in light of scientific practice and the history of science. It's a talk that I'm working up into a longer version to be presented at the American…
jlynch | March 12, 2009Next week there is a big conference here at ASU - hosted in conjunction with University of Cambridge - examining the concept of "Unchallengeable Orthodoxy in Academia and Science." The general purpose of the conference is:
To critically examine the precept that American and British universities and the scientific communities in these countries are, and should be places, in which people are free to "think the unthinkable, discuss the unmentionable, and challenge the unchallengeable." (Quoting 1975 Statement of Yale Committee on Freedom of Expression).
Specifically, the conference will…
jlynch | March 11, 2009The following is shamelessly lifted from Jim Lippard's blog:
On March 28, SkeptiCamp Phoenix 2009 will take place at Arizona State University in Tempe.
Participants include Mike Stackpole of the Phoenix Skeptics on "Practical Techniques for Street Skepticism," John Lynch on "Academic Freedom and Intelligent Design," and Tony Barnhart on "Methods of the Pseudo-Psychic."
The event is sponsored by the Skeptics Society/Skeptic magazine, the Center for Skeptical Inquiry/Skeptical Inquirer magazine, and by the James Randi Educational Foundation. It will be the fifth SkeptiCamp, after two in…
jlynch | January 7, 2009Jim Lippard is organizing SkeptiCamp Phoenix 2009. A SkeptiCamp is "a conference whose content is provided by attendees. Where BarCamp is focused on technology, SkeptiCamp instead focuses on topics of interest to skeptics, including science, critical thinking and skeptical inquiry." The event is planned for February 21st and I've already agreed to talk on "Academic Freedom" and the Intelligent Design movement. If you are an Arizona skeptic, or even from further afield, wander on over to the Camp Wiki and sign-up either to attend or present.
There's a FaceBook group as well, by the way.
voltagegate | May 2, 2008In one week exactly, I will be attending a scientific conference in a hot vacation spot for people across the world. Millions flock there every day to relax, socialize and wtfpwn your face with their Night Elf Mohawk.
It ain't Belize, baby; it's the World of Warcraft.
"Convergence of the Real and the Virtual", the first ever scientific conference to be held within WoW, was proposed by John Bohannon, the Gonzo Scientist from Science magazine. It kicks off in Ogrimmar on the Earthen Ring server (RP) next Friday at 12:30 p.m. The conference will focus on MMOs as "natural labs" for research,…