cagapakis
Posts by this author
July 16, 2010
Check out these iGEM twitter pages to follow the antics of iGEM teams around the world this summer (and let me know if I missed any teams)!
iGEM headquarters @igem
Biotec Dresden @igem_biotec
Bielefeld @iGEM_Bielefeld
Brazil @igembrasil
Calgary @iGEMCalgary
Cambridge @camgem
Canada @igemcanada…
July 12, 2010
I don't usually like to post links from BoingBoing because I imagine everyone has already seen this already, but as it is about some of my favorite things (synthetic biology, biomaterials, and fashion) I couldn't resist!
Designer Suzanne Lee makes clothes using cellulose-based fabrics made entirely…
July 11, 2010
I am thrilled to announce that I will be one of the Synthetic Aesthetics residents this fall. Synthetic Aesthetics is a new program run through Stanford and the University of Edinburgh and funded by the National Science Foundation and the UK's Engineering and Physical Sciences Research Council that…
July 10, 2010
Science is cooking done in a lab. Mixing carefully (or not so carefully) measured components, heating, cooling, observing phase transitions, exploring the behavior of animal and plant proteins, exploring the properties of different chemicals, slowly changing variables to optimizing procedures.…
June 22, 2010
There's a terrific new article about synthetic biology in SEED by James King, go check it out! Here's a little taste:
"Synthetic biology" is a catch-all label liberally applied to a host of methods for designing and constructing living things. Given the term's multiple definitions, one of Synthia's…
June 15, 2010
The first (and sometimes 3rd, 12th, 25th, 134th...) step of any genetic engineering experiment is often extracting DNA from some organism or another. While novel gene synthesis technology will likely make this procedure obsolete, these days it's still most economical to do it by hand. Extracting…
June 13, 2010
iGEM officially starts for the Harvard team tomorrow for some good old-fashioned fun with BioBricks, arabidopsis, protein-based sweeteners, and shRNA! Our goal is to make a system for genetically engineering plants safely and easily with some hopefully fun and useful applications in the short term…
June 10, 2010
In the recent articles, blog posts, and comment threads about possible biological reasons for the continued gender disparity in tenured math and science faculty positions, the discussion seems to be divided between two groups: those who emphasize the social and cultural aspects involved in gender…
June 8, 2010
Another day, another article about how women are biologically inferior to men when it comes to high-level math and science. The fact that this one comes from the New York Times Science section, a newspaper I typically respect very highly, is all the more tragic and frustrating. I don't have time…
June 8, 2010
In a recent conversation about the safety and ethics of synthetic biology in the wake of the announcement of the synthetic genome, many of the professors I was chatting with commented on how they hoped new synthetic biology technology would lead to bacteria that could eat the oil spilling into the…
June 6, 2010
Silk is an amazing biomaterial, cultivated and prized for more than 5,000 years. The silk threads that we weave into our shiny fabrics are actually enormous protein crystals produced by insects. This industrial silk that you can buy at the mall is made by silkworms, which use the silk to form the…
June 2, 2010
The World Science Festival starts today in New York City with tons of exciting events from BioArt to The Science of Star Trek and all sorts of great stuff in between! If you can't make it to New York there's also a twitter page and a blog here on ScienceBlogs accompanying the event that you can…
June 2, 2010
Biosafety has been on everyone's mind this week after the announcement of the J. Craig Venter Institute's successful transplantation of a synthetic genome. What horrible pathogen will future bioengineers be able to design? What unforeseeable environmental catastrophe will befall us upon the release…
June 1, 2010
I'm realizing that perhaps in yesterday's post I took everyone's love and understanding of postmodern feminist theory for granted so I'm going to start a little series of posts that I think will slowly introduce some of the issues that I spend a lot of time thinking about and hope that other people…
May 31, 2010
I love this quote from the XKCD blog:
The role of gender in society is the most complicated thing I've ever spent a lot of time learning about, and I've spent a lot of time learning about quantum mechanics.
Many scientists try very hard to de-emphasize this complexity, trying to reduce "human…
May 29, 2010
I had the pleasure of chatting with John Hawks about the two big science news stories of the past few months, the synthetic genome and the Neandertal genome, for Science Saturday at bloggingheads.tv.
John is a professor of anthropology at the University of Wisconsin who studies population…
May 28, 2010
I don't get nearly as many emails asking for advice as I'm sure the lovely and talented Dr. Isis does, and I'm not sure if my advice can compare in quality and sassiness to hers, but I want to address the questions I get most often--how do you get into synthetic biology if your background is in…
May 26, 2010
There is big excitement in lab today--my very talented labmate Jake has won the Division of Medical Sciences graduate student science haiku contest!!! Here is his burrito winning entry:
Green lasers on high
Shining to illuminate
Synechococcus!
It's definitely haiku day over here, so share your…
May 26, 2010
There is an interesting and very thoughtful piece by Craig Venter and Daniel Gibson in today's Wall Street Journal going through what their breakthrough is and what it isn't, where they see the project going in the future, and why public discussion is important:
[Previous genetic engineers] did…
May 25, 2010
A recent New York Times article tells us that what many people call food allergies are actually simple intolerances, and that allergies are being dangerously overdiagnosed. What is a true food allergy, and what can be done to fix them besides banning peanuts from schools and avoiding foods that…
May 21, 2010
The reaction to the Venter Institute's synthetic genome transplantation has been decidedly mixed. Is this the beginning of something new and wonderful, the ability to really design organisms from scratch? Is it something more sinister, the beginning of a dark era where techno-corporate (or…
May 20, 2010
This is a pretty old video we made about Craig Venter that I've shared before on Hydrocalypse, but I think now is a good time to share it again. When Craig isn't creating synthetic bacteria, he's sailing the world, searching the oceans for interesting DNA sequences. We were inspired by this…
May 20, 2010
The J. Craig Venter Institute has just announced the creation of the first bacterial cell controlled by a genome that is entirely chemically synthesized (PDF). The group has been working towards this goal for several years now, first working out how to synthesize and assemble such large pieces of…
May 18, 2010
I've written before about artificial life researchers from the 18th and 20th centuries working to create robots that attempt to recreate the human voice. I recently saw this terrifying video over at the PopSci blog of a recent robotic voice machine and wanted to share it:
Over at Noise For…
May 18, 2010
My silkworms are starting to turn into silkmoths! The first moth emerged from his cocoon this weekend, I hope more are close behind so that he can mate before he dies! I didn't expect him to come out so soon so I didn't have my real camera but I wanted to share my blurry phone pictures of the event…
May 17, 2010
Are aliens little green men of unpredictable motives? Horrible insect-like face-hugging, chest-exploding monsters? Are they super-smart, super-slimy, super-fishy, body-cavity-probing, disc-flying creatures, searching for planets to colonize and people to destroy as Stephen Hawking warned, or are…
May 15, 2010
I've been co-teaching a short class on synthetic biology this spring through the MIT High School Studies Program (HSSP). The program is awesome, I took classes through a similar MIT program as a nerdy middle schooler and have had a great time teaching the past few weeks (if you're in the Boston…
May 11, 2010
Unlike many of my colleagues, I'm not really interested in the whole "science vs. religion" thing, but I do want to point out the very thoughtful analysis of genetic engineering and synthetic biology by the Church of Scotland's Society, Religion, and Technology Project. On GM food, they write:
The…
May 10, 2010
I'm a little late in posting about the recent work of Tuur Van Balen, a Belgian designer who uses art and design to explore the boundaries between people and technology. His work has explored synthetic biology and biotechnology for years, and I first was introduced to his work through news of his…
May 10, 2010
The past few days I've been learning a lot about the bacteria that surround me and realizing just how labor intensive an actually well-controlled handwashing experiment can be! Here is a little bit more of the data I've collected about bacteria on everyday objects:
Dusty corners (unsurprisingly?)…